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Imaging data

Published Data

General useful data sources

Imaging data at the EMBL-EBI:

Data available from research groups in Sweden

The list of available data on this Portal was curated manually until February 2022. After February 2022, we instead began to use a script to query the Europe PMC database (making use of their API) in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or code. The code used for the query is written in Python and, as with all of our code, it is openly available in GitHub. We welcome others to reuse it and to repurpose it for other pathogens.

The lists of available data may not be exhaustive as the script used to generate it does not search for every possible database/repository. If you find that a dataset is missing, or that the information related to it is incorrect, please get in touch with us

Last updated: 2024-02-14

Publication Available dataset and code
Sengar A., Cervantes M., Bondalapati S. T., Hess T., et al (2023)
American Society for Microbiology
DOI: 10.1128/jvi.01992-22
Kumra Ahnlide V., Kumra Ahnlide J., Wrighton S., Beech J. P., et al (2022)
eLife Sciences Publications, Ltd
DOI: 10.7554/elife.64709
Hellman U., Karlsson M. G., Engström-Laurent A., Cajander S., et al (2021)
Elsevier BV
DOI: 10.1074/jbc.AC120.015967
Bocci M., Oudenaarden C., Sàenz-Sardà X., Simrén J., et al (2021)
DOI: 10.3390/ijms222111622
Koenig P., Das H., Liu H., Kümmerer B. M., et al (2021)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/science.abe6230
Maucourant C., Filipovic I., Ponzetta A., Aleman S., et al (2020)
American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciimmunol.abd6832
Gao J., Liu J., Wen H., Liu H., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1186/s12931-020-01363-7