Published Data
General useful data sources
- The COVID-19 Response Measures Database, compiled by the European Centre For Disease Prevention and Control (ECDC). The database is an archive of non-pharmaceutical interventions, or measures, introduced by 30 countries in the European Union and the European Economic Area in response to the coronavirus disease (COVID-19) pandemic, including the start and end date of each measure. The database is reviewed and updated every two weeks.
Data available from research groups in Sweden
The list of available data on this Portal was curated manually until February 2022. After February 2022, we instead began to use a script to query the Europe PMC database (making use of their API) in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or code. The code used for the query is written in Python and, as with all of our code, it is openly available in GitHub. We welcome others to reuse it and to repurpose it for other pathogens.
The lists of available data may not be exhaustive as the script used to generate it does not search for every possible database/repository. If you find that a dataset is missing, or that the information related to it is incorrect, please get in touch with us
Last updated: 2024-09-04
Publication | Available dataset and code |
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Menger N. S., Tognetti A., Farruggia M. C., Mucignat C., et al (2024)
JMIR Publications Inc.
DOI: 10.2196/47064
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Hellgren F., Rosdahl A., Arcoverde Cerveira R., Lenart K., et al (2024)
American Society for Clinical Investigation
DOI: 10.1172/jci.insight.175401
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Pallari C. T., Achilleos S., Quattrocchi A., Gabel J., et al (2024)
BMJ
DOI: 10.1136/bmjgh-2023-013018
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Bali Swain R., Lin X., Wallentin F. Y. (2024)
Elsevier BV
DOI: 10.1016/j.heliyon.2024.e25090
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Wixe S., Lobo J., Mellander C., Bettencourt L. M. A. (2024)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-024-52988-3
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Andreasson A., Tognetti A., Jones M., Lekander M., et al (2023)
Elsevier BV
DOI: 10.1016/j.bbih.2023.100708
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Kloss P., Lindholz M., Milnik A., Azoulay E., et al (2023)
Springer Science and Business Media LLC
DOI: 10.1186/s13613-023-01201-1
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Zavrakli E., Parnell A., Malone D., Duffy K., et al (2023)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0290974
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Vikström L., Fjällström P., Gwon Y., Sheward D. J., et al (2023)
Elsevier BV
DOI: 10.1016/j.lanepe.2023.100646
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Shah H. A., Baker T., Schell C. O., Kuwawenaruwa A., et al (2023)
Springer Science and Business Media LLC
DOI: 10.1007/s41669-023-00418-x
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Xiao S., Dang J. (2023)
Frontiers Media SA
DOI: 10.3389/fpsyg.2023.1124627
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Gao J., Zhou C., Liang H., Jiao R., et al (2023)
Frontiers Media SA
DOI: 10.3389/fpubh.2023.1052946
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Bonilla J. A., Lopez-Feldman A., Pereda P. C., Rivera N. M., et al (2023)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0280355
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Lan Y., Yin L., Wang X. (2022)
Springer Science and Business Media LLC
DOI: 10.1186/s12982-022-00119-6
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Bergström F., Günther F., Höhle M., Britton T. (2022)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1010767
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Larsson E. C., Wittberg E., Lundåsen S. W. (2022)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pgph.0001204
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King C., Shaha S. K., Morrison J., Ahmed N., et al (2022)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pgph.0001110
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van Zoest V., Varotsis G., Menzel U., Wigren A., et al (2022)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-022-19155-y
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Olofsson T., Vilhelmsson A. (2022)
Elsevier BV
DOI: 10.1016/j.dib.2021.107698
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Ehling R. A., Weber C. R., Mason D. M., Friedensohn S., et al (2022)
Elsevier BV
DOI: 10.1016/j.celrep.2021.110242
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Rück C., Mataix-Cols D., Malki K., Adler M., et al (2022)
BMJ
DOI: 10.1136/bmjopen-2021-049302
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Havervall S., Jernbom Falk A., Klingström J., Ng H., et al (2022)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0262169
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Wang J., Dalla Barba F., Roccon A., Sardina G., et al (2022)
The Royal Society
DOI: 10.1098/rsif.2021.0819
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Beridze G., Triolo F., Grande G., Fratiglioni L., et al (2022)
BMJ
DOI: 10.1136/bmjopen-2021-058422
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Kozielski F., Sele C., Talibov V. O., Lou J., et al (2022)
Royal Society of Chemistry (RSC)
DOI: 10.1039/D1CB00135C
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Pimenoff V. N., Elfström M., Conneryd Lundgren K., Klevebro S., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0260453
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Mondino E., Di Baldassarre G., Mård J., Ridolfi E., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41597-020-00778-7
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Axfors C., Janiaud P., Schmitt A. M., van’t Hooft J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12879-021-06829-7
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Sheward D. J., Mandolesi M., Urgard E., Kim C., et al (2021)
Elsevier BV
DOI: 10.1016/j.xcrm.2021.100450
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Mahamat-Saleh Y., Fiolet T., Rebeaud M. E., Mulot M., et al (2021)
BMJ
DOI: 10.1136/bmjopen-2021-052777
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Månsson V., Wall H., Berman A. H., Jayaram-Lindström N., et al (2021)
Frontiers Media SA
DOI: 10.3389/fpsyg.2021.708037
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Dahlen M., Thorbjørnsen H., Sjåstad H., von Heideken Wågert P., et al (2021)
MDPI AG
DOI: 10.3390/ijerph182010680
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Kapiriri L., Kiwanuka S., Biemba G., Velez C., et al (2021)
Oxford University Press (OUP)
DOI: 10.1093/heapol/czab113
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Nilsson N., Bendix M., Öhlund L., Widerström M., et al (2021)
MDPI AG
DOI: 10.3390/jcm10194411
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O'Toole Á., Hill V., Pybus O. G., Watts A., et al (2021)
F1000 Research Ltd
DOI: 10.12688/wellcomeopenres.16661.2
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Millroth P., Frey R. (2021)
Elsevier BV
DOI: 10.1016/j.janxdis.2021.102454
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Mäkelä P., Rossow I., Moan I. S., Bye E. K., et al (2021)
Wiley
DOI: 10.1002/mpr.1892
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Ohrnberger J., Segal A. B., Forchini G., Miraldo M., et al (2021)
Oxford University Press (OUP)
DOI: 10.1093/eurpub/ckab138
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Kerr J. R., Schneider C. R., Recchia G., Dryhurst S., et al (2021)
BMJ
DOI: 10.1136/bmjopen-2020-048025
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Wang K., Goldenberg A., Dorison C. A., Miller J. K., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41562-021-01173-x
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Britton T., Trapman P., Ball F. (2021)
The Royal Society
DOI: 10.1098/rsos.210386
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Manica M., Guzzetta G., Riccardo F., Valenti A., et al (2021)
Nature Communications
DOI: https://doi.org/10.1038/s41467-021-24832-z
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Solís Arce J. S., Warren S. S., Meriggi N. F., Scacco A., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41591-021-01454-y
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Recalde M., Roel E., Pistillo A., Sena A. G., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41366-021-00893-4
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Razzaq M., Iglesias M. J., Ibrahim-Kosta M., Goumidi L., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-93390-7
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Meili K. W., Jonsson H., Lindholm L., Månsdotter A. (2021)
SAGE Publications
DOI: 10.1177/14034948211023633
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Altay O., Arif M., Li X., Yang H., et al (2021)
Wiley
DOI: 10.1002/advs.202101222
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Lindholt M. F., Jørgensen F., Bor A., Petersen M. B. (2021)
BMJ
DOI: 10.1136/bmjopen-2020-048172
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Krambrich J., Akaberi D., Ling J., Hoffman T., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12985-021-01556-6
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Using a household-structured branching process to analyse contact tracing in the SARS-CoV-2 pandemic
Fyles M., Fearon E., Overton C., Wingfield T., et al (2021)
The Royal Society
DOI: 10.1098/rstb.2020.0267
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Mahdi A., Błaszczyk P., Dłotko P., Salvi D., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-88481-4
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Louca P., Murray B., Klaser K., Graham M. S., et al (2021)
BMJ
DOI: 10.1136/bmjnph-2021-000250
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Axfors C., Schmitt A. M., Janiaud P., van’t Hooft J., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-021-22446-z
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Blanco N., Stafford K. A., Lavoie M. C., Brandenburg A., et al (2021)
Cambridge University Press (CUP)
DOI: 10.1017/S0950268821000649
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Pakpour A. H., Al Mamun F., Hosen I., Griffiths M. D., et al (2021)
Elsevier BV
DOI: 10.1016/j.dib.2020.106621
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Dillner J., Elfström K. M., Blomqvist J., Eklund C., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-021-84356-w
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Snitz K., Honigstein D., Weissgross R., Ravia A., et al (2021)
Cold Spring Harbor Laboratory
DOI: 10.1101/2021.02.18.21251422
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Ledberg A. (2021)
Frontiers Media SA
DOI: 10.3389/fpubh.2021.579948
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Feldman M., Lacey Krylova V., Farrow P., Donovan L., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0244924
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Saguti F., Magnil E., Enache L., Churqui M. P., et al (2021)
Elsevier BV
DOI: 10.1016/j.watres.2020.116620
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Björkman A., Engström M., Winblad U., Holmström I. K. (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12912-021-00540-3
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Sallam M., Dababseh D., Eid H., Al-Mahzoum K., et al (2021)
MDPI AG
DOI: 10.3390/vaccines9010042
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Delavari S., Abolhassani H., Abolnezhadian F., Babaha F., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1007/s10875-020-00928-x
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Lundon D. J., Mohamed N., Lantz A., Goltz H. H., et al (2020)
Frontiers Media SA
DOI: 10.3389/fpubh.2020.571364
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Pellert M., Lasser J., Metzler H., Garcia D. (2020)
Frontiers Media SA
DOI: 10.3389/fdata.2020.00032
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Burn E., You S. C., Sena A. G., Kostka K., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-18849-z
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Smyrlaki I., Ekman M., Lentini A., Rufino de Sousa N., et al (2020)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-020-18611-5
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Morgantini L. A., Naha U., Wang H., Francavilla S., et al (2020)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0238217
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